Genie Examples

PedGenie Examples
Single Locus Example This example analyses each marker as a single locus.
Single Locus GeneCountAllele Example Similar to the Single Locus Example, but the allele frequency estimation method GeneCounter from GeneCountAlleles program is used.
Composite Genotype Example This example examines the joint inheritance of two or more markers, without considering phase of the data.
Haplotype Example This example examines the joint inheritance of two or more markers, using phased data.
CMH / Meta Analysis Examples Example of CMH / meta test statistics for multiple studies.
QTDT Interface Example This is a PedGenie - QTDT Interface example.
Weighted Index Example This example is similar to the Single Locus Example, but all founders are assigned with unique alleles, and gene-drop to the rest of the pedigree for use in the weighting algorithm.
 
hapMC Examples
Composite Genotype Example This example examines the joint inheritance of two or more markers, with GCHap phased data method.
Haplotype Example This example examines the joint inheritance of two or more markers, with GCHap phased data method.
 
hapConstructor Example
Single Gene hapConstructor 1.0 Example This example examine the contruction of haplotype analyses of a two loci using unphased data.
Gene-Gene hapConstructor 2.0 Example This example examine the contruction of haplotype analyses of a two loci using unphased data.
 
QTDT Example
QTDT Example This example demonstrates Genie and QTDT Interface with phased data.

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