PedGenie Examples

Single Locus Example This example analyses each marker as a single locus.
Single Locus GeneCountAllele Example Similar to the Single Locus Example, but the allele frequency estimation method GeneCounter from the GeneCountAlleles program is used.
Composite Genotype Example This example examines the joint inheritance of two or more markers, without considering phase of the data.
Haplotype Example This example examines the joint inheritance of two or more markers, using phased data.
Meta / CMH Analysis Example Example of Meta / CMH test statistics for multiple studies.
QTDT Interface Example This is a PedGenie - QTDT Interface example.
Weighted Index Example This example is similar to the Single Locus Example, but the founders are assigned with unique alleles, and gene-drop to the rest of the pedigree for use in the weighting algorithm.

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